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Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
Cluster 3 - 260 Common Genes - Mesenchymal Stem Cells (MSCs) and Chondrocytes (Chds)
Entrez Gene
Gene Name
programmed cell death 6 interacting protein solute carrier family 25 (aspartate/glutamate interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, euchromatic histone-lysine N-methyltransferase 1 GABA(A) receptor-associated protein-like 2 major facilitator superfamily domain containing 6 NSL1, MIND kinetochore complex component, G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
programmed cell death 4 (neoplastic transformation eukaryotic translation initiation factor 2 alpha CD59 molecule, complement regulatory protein NADH dehydrogenase (ubiquinone) complex I, SLIT-ROBO Rho GTPase activating protein 1 NIMA (never in mitosis gene a)-related kinase 2 N-acetylglucosamine-1-phosphodiester alpha-N- DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 steroid sulfatase (microsomal), isozyme S chromatin assembly factor 1, subunit B (p60) G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
polymerase (DNA-directed), delta interacting BRCA1 interacting protein C-terminal helicase 1 platelet-activating factor acetylhydrolase 1b, bromodomain PHD finger transcription factor ATP-binding cassette, sub-family D (ALD), EP300 interacting inhibitor of differentiation 2B Myb/SANT-like DNA-binding domain containing 4 single-strand-selective monofunctional uracil-DNA G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
erythrocyte membrane protein band 4.1-like 1 discoidin, CUB and LCCL domain containing 2 eukaryotic translation initiation factor 4 gamma, 3 1-acylglycerol-3-phosphate O-acyltransferase 3 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase DnaJ (Hsp40) homolog, subfamily C, member 14 peptidase (mitochondrial processing) alpha G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
diphosphoinositol pentakisphosphate kinase 2 spindle and kinetochore associated complex subunit spastic paraplegia 7 (pure and complicated guanine nucleotide binding protein (G protein) frequently rearranged in advanced T-cell integrin alpha FG-GAP repeat containing 3 proteasome (prosome, macropain) activator subunit monooxygenase activation protein, eta polypeptide La ribonucleoprotein domain family, member 1 nuclear fragile X mental retardation protein G protein-coupled receptor kinase interacting cytochrome P450, family 51, subfamily A, G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
phosphatidylinositol glycan anchor biosynthesis, metallo-beta-lactamase domain containing 2 low density lipoprotein receptor-related protein 5 phosphatidylinositol glycan anchor biosynthesis, upstream binding transcription factor, RNA lanosterol synthase (2,3-oxidosqualene-lanosterol poly (ADP-ribose) polymerase family, member 3 NFS1 nitrogen fixation 1 homolog (S. cerevisiae) G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
kelch repeat and BTB (POZ) domain containing 6 phosphatidylinositol glycan anchor biosynthesis, solute carrier family 27 (fatty acid transporter), patatin-like phospholipase domain containing 3 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase adaptor protein, phosphotyrosine interaction, PH cullin-associated and neddylation-dissociated 1 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N- FCF1 small subunit (SSU) processome component solute carrier family 2 (facilitated glucose family with sequence similarity 213, member A G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
fasciculation and elongation protein zeta 2 (zygin ubiquitin-like modifier activating enzyme 1 N(alpha)-acetyltransferase 40, NatD catalytic SEC22 vesicle trafficking protein homolog A (S. DnaJ (Hsp40) homolog, subfamily C, member 16 vacuolar protein sorting 13 homolog A (S. ARP1 actin-related protein 1 homolog A, centractin vacuolar protein sorting 18 homolog (S. cerevisiae) DnaJ (Hsp40) homolog, subfamily C, member 13 transient receptor potential cation channel, CDC14 cell division cycle 14 homolog B (S. G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
clathrin heavy chain linker domain containing 1 methylmalonic aciduria (cobalamin deficiency) solute carrier family 39 (zinc transporter), member thrombospondin, type I, domain containing 4 ATPase, aminophospholipid transporter, class I, ectodermal-neural cortex 1 (with BTB-like domain) dual serine/threonine and tyrosine protein kinase solute carrier family 20 (phosphate transporter), transmembrane and coiled-coil domain family 1 progesterone receptor membrane component 2 excision repair cross-complementing rodent repair transforming growth factor, beta receptor 1 solute carrier family 7 (amino acid transporter light G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Appendix A. Cluster 3 - 260 Common MSCs and Chds Genes
Cluster 3
Mixed Clustering and Networks MSCs (0.5) and Chds (0.4)
tectonin beta-propeller repeat containing 1 translocase of inner mitochondrial membrane asp (abnormal spindle) homolog, microcephaly deoxyribose-phosphate aldolase (putative) chaperonin containing TCP1, subunit 3 (gamma) interferon (alpha, beta and omega) receptor 1 ring finger and WD repeat domain 2, E3 ubiquitin G Skreti et al
Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation

Source: http://www.display.tuc.gr/skret.temporal-spatial-patterns-study/files/Appendix%20A-260CommonGenes-Cluster3.pdf

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